Prolouge to the issue:
Lost physical copy, bought digital copy, found physical copy, ended up transfering physical copy save to digital copy.
So after all that it seems that Pokemon X takes for ever to go to the homescreen when pressed, but only when inside the game save. At the start screen, Mystery gift, and Live Competition screens, the game will only take 1-2 seconds to get to the home screen. However when it is in the game it can take up to 40 seconds to go back to the home screen. Any way this could be fixed?!